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<a href="chromosome__igka_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;</div><div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="preprocessor">#ifndef CHROMOSOME_IGKA_HPP</span></div><div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#define CHROMOSOME_IGKA_HPP</span></div><div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;</div><div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &lt;utility&gt;</span>      <span class="comment">// std::move</span></div><div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div><div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="matrix_8hpp.html">matrix.hpp</a>&quot;</span></div><div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="chromosome__fixedlength_8hpp.html">chromosome_fixedlength.hpp</a>&quot;</span></div><div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="instance_8hpp.html">instance.hpp</a>&quot;</span></div><div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="partition__label_8hpp.html">partition_label.hpp</a>&quot;</span></div><div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="linear__algebra__level1_8hpp.html">linear_algebra_level1.hpp</a>&quot;</span></div><div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="clustering__operator__centroids_8hpp.html">clustering_operator_centroids.hpp</a>&quot;</span></div><div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;</div><div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="keyword">namespace </span><a class="code" href="namespacegaencode.html">gaencode</a> {</div><div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div><div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;</div><div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="keyword">template</span> &lt;<span class="keyword">class </span>T_CLUSTERIDX,</div><div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;          <span class="keyword">class </span>T_METRIC,</div><div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;          <span class="keyword">class </span>T_FEATURE,</div><div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;          <span class="keyword">class </span>T_FEATURE_SUM,</div><div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;          <span class="keyword">class </span>T_INSTANCES_CLUSTER_K</div><div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;          &gt;</div><div class="line"><a name="l00045"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html">   45</a></span>&#160;<span class="keyword">class </span><a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html">ChromosomeIGKA</a>: </div><div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;  <span class="keyword">public</span> <a class="code" href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength</a>&lt;T_CLUSTERIDX,T_METRIC&gt;</div><div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;{</div><div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;<span class="keyword">public</span>:</div><div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a57eb24b8fdb94fb0680815bcfb40b665">ChromosomeIGKA</a></div><div class="line"><a name="l00050"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a57eb24b8fdb94fb0680815bcfb40b665">   50</a></span>&#160;  (<span class="keyword">const</span> <a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a>   aiuintidx_numClusterK</div><div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;   ) </div><div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;    : <a class="code" href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;</a>()</div><div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a></div><div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;    (aiuintidx_numClusterK,<a class="code" href="classdata_1_1_instance.html">data::Instance&lt;T_FEATURE&gt;::getNumDimensions</a>())</div><div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7a41e675fd697f7b39e9abe546dc8a99">_matrixrowt_sumInstancesCluster</a></div><div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;    (aiuintidx_numClusterK,<a class="code" href="classdata_1_1_instance.html">data::Instance&lt;T_FEATURE&gt;::getNumDimensions</a>())</div><div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>(aiuintidx_numClusterK)</div><div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">_arrayT_WCV</a>(<span class="keyword">new</span> T_METRIC[aiuintidx_numClusterK])</div><div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a></div><div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;    (<a class="code" href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;::stcgetStringSize</a>(),</div><div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;     aiuintidx_numClusterK</div><div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;     )</div><div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a99f94f4f076742184f74f5ef92b0128c">_arrayT_distSumINSTiCLUSTE1k</a></div><div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;    (<span class="keyword">new</span> T_METRIC[<a class="code" href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;::stcgetStringSize</a>()])</div><div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">_arrayT_distMaxINSTiCLUSTEk</a></div><div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;    (<span class="keyword">new</span> T_METRIC[<a class="code" href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;::stcgetStringSize</a>()])</div><div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">_arrayT_distMinINSTiCLUSTEk</a></div><div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;    (<span class="keyword">new</span> T_METRIC[<a class="code" href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;::stcgetStringSize</a>()])</div><div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ac3d94523feb724763c12b80ca448426d">_arraycidx_idxMinINSTiCLUSTEk</a></div><div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;    (<span class="keyword">new</span> T_CLUSTERIDX[<a class="code" href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;::stcgetStringSize</a>()])</div><div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a18814e038f39b810fbd122c7f3e78db6">_arraycidx_idxMaxINSTiCLUSTEk</a></div><div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;    (<span class="keyword">new</span> T_CLUSTERIDX[<a class="code" href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;::stcgetStringSize</a>()])</div><div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">_matrixrowt_sumInstancesClusterDelta</a></div><div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;    (aiuintidx_numClusterK,</div><div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;     <a class="code" href="classdata_1_1_instance.html">data::Instance&lt;T_FEATURE&gt;::getNumDimensions</a>()</div><div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;     )</div><div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a8594d1e35c89a9a9925f0a7ec8be56d7">_vectorT_numInstancesClusterKDelta</a>(aiuintidx_numClusterK,0)</div><div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ae132b7c0e9861ca9b550a988383b0b70">_vectorb_changeCluster</a>(aiuintidx_numClusterK,<span class="keyword">false</span>)</div><div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;</div><div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">_cidx_numClusterNotNull</a>(0)</div><div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aebbbc640e621d86e5b286118e2c80798">_t_TWCVDelta</a>(0)</div><div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a554a7535ec6512c105d6078eed7af749">_b_selected</a>(<span class="keyword">false</span>)</div><div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;  {     </div><div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;  }</div><div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;</div><div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;  <span class="comment">//copy constructor</span></div><div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a57eb24b8fdb94fb0680815bcfb40b665">ChromosomeIGKA</a></div><div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a37b231114d363832f71092ba37fd688c">   88</a></span>&#160;  (<span class="keyword">const</span> <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html">ChromosomeIGKA</a></div><div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;   &lt;T_CLUSTERIDX,</div><div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;    T_METRIC,</div><div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;    T_FEATURE,</div><div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;    T_FEATURE_SUM,</div><div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;    T_INSTANCES_CLUSTER_K&gt;                   &amp;aich_chromosome</div><div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;   )</div><div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;    : <a class="code" href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;</a>(aich_chromosome)</div><div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>(aich_chromosome._matrixrowt_centroids)</div><div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7a41e675fd697f7b39e9abe546dc8a99">_matrixrowt_sumInstancesCluster</a>(aich_chromosome._matrixrowt_sumInstancesCluster)</div><div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>(aich_chromosome._vectorT_numInstancesClusterK)</div><div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;</div><div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">_arrayT_WCV</a>(<span class="keyword">new</span> T_METRIC[aich_chromosome._matrixrowt_centroids.getNumRows()])</div><div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a>(aich_chromosome._matrixrowt_distINSTiCLUSTE1k)</div><div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;</div><div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a99f94f4f076742184f74f5ef92b0128c">_arrayT_distSumINSTiCLUSTE1k</a>(<span class="keyword">new</span> T_METRIC[aich_chromosome.getStringSize()])</div><div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">_arrayT_distMaxINSTiCLUSTEk</a>(<span class="keyword">new</span> T_METRIC[aich_chromosome.getStringSize()])</div><div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">_arrayT_distMinINSTiCLUSTEk</a>(<span class="keyword">new</span> T_METRIC[aich_chromosome.getStringSize()])</div><div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ac3d94523feb724763c12b80ca448426d">_arraycidx_idxMinINSTiCLUSTEk</a>(<span class="keyword">new</span> T_CLUSTERIDX[aich_chromosome.getStringSize()])</div><div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a18814e038f39b810fbd122c7f3e78db6">_arraycidx_idxMaxINSTiCLUSTEk</a>(<span class="keyword">new</span> T_CLUSTERIDX[aich_chromosome.getStringSize()])</div><div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;</div><div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">_matrixrowt_sumInstancesClusterDelta</a></div><div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;    (aich_chromosome._matrixrowt_sumInstancesClusterDelta)</div><div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a8594d1e35c89a9a9925f0a7ec8be56d7">_vectorT_numInstancesClusterKDelta</a></div><div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;      (aich_chromosome._vectorT_numInstancesClusterKDelta)</div><div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ae132b7c0e9861ca9b550a988383b0b70">_vectorb_changeCluster</a>(aich_chromosome._vectorb_changeCluster)</div><div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;</div><div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">_cidx_numClusterNotNull</a>(aich_chromosome._cidx_numClusterNotNull)</div><div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aebbbc640e621d86e5b286118e2c80798">_t_TWCVDelta</a>(aich_chromosome._t_TWCVDelta)</div><div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a554a7535ec6512c105d6078eed7af749">_b_selected</a>(aich_chromosome._b_selected)</div><div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;  {</div><div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;    </div><div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;    <a class="code" href="namespaceinterfacesse.html#a925f44ed84d40e9af5050fa0e1373396">interfacesse::copy</a></div><div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;      (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">_arrayT_WCV</a>,</div><div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;       aich_chromosome._arrayT_WCV,</div><div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;       <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getNumRows()</div><div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;       );</div><div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;</div><div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;    <a class="code" href="namespaceinterfacesse.html#a925f44ed84d40e9af5050fa0e1373396">interfacesse::copy</a></div><div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;      (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a99f94f4f076742184f74f5ef92b0128c">_arrayT_distSumINSTiCLUSTE1k</a>,</div><div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;       aich_chromosome._arrayT_distSumINSTiCLUSTE1k,</div><div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;       aich_chromosome.getStringSize()</div><div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;       );</div><div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;</div><div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;    <a class="code" href="namespaceinterfacesse.html#a925f44ed84d40e9af5050fa0e1373396">interfacesse::copy</a></div><div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;      (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">_arrayT_distMaxINSTiCLUSTEk</a>,</div><div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;       aich_chromosome._arrayT_distMaxINSTiCLUSTEk,</div><div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;       aich_chromosome.getStringSize()</div><div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;       );</div><div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;</div><div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160; 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  &lt;T_CLUSTERIDX,</div><div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;    T_METRIC,</div><div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;    T_FEATURE,</div><div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    T_FEATURE_SUM,</div><div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;    T_INSTANCES_CLUSTER_K&gt;                 &amp;&amp;aich_chromosome</div><div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;   )</div><div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;    : <a class="code" href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;</a>(aich_chromosome)</div><div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;    , <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a></div><div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160; 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   T_CLUSTERIDX lcidx_numClusterK  = </div><div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;      (T_CLUSTERIDX) <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getNumRows();</div><div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;    </div><div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;    <a class="code" href="classpartition_1_1_partition_label.html">partition::PartitionLabel</a></div><div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;      &lt;T_CLUSTERIDX&gt;</div><div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;      lpartition_clusters</div><div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;      (this-&gt;<a class="code" href="classgaencode_1_1_chrom_fixed_length.html#a4d1d15f6be16c0d0a23824033993aa71">getString</a>(),</div><div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;       this-&gt;<a class="code" href="classgaencode_1_1_chrom_fixed_length.html#aac60dd08cf0d29f08845a6381d84edad">getStringSize</a>(),</div><div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;       lcidx_numClusterK</div><div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;       );</div><div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;    </div><div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;    this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7a41e675fd697f7b39e9abe546dc8a99">_matrixrowt_sumInstancesCluster</a>.<a class="code" href="classmat_1_1_matrix_row.html#a1070fba1c0ec0fbaa309f141817be412">initialize</a>();</div><div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;    </div><div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160;    <a class="code" href="namespaceinterfacesse.html#aa4b94bf2bf8cb7c437fa3feba8b70ff8">interfacesse::copya</a></div><div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;      (this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>.data(),</div><div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;       T_INSTANCES_CLUSTER_K(0),</div><div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160;       (<a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a>) this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>.size()</div><div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;       );</div><div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;    </div><div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;    T_CLUSTERIDX lcidx_numClusterNull =</div><div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;      <a class="code" href="namespaceclusteringop.html#ac52fbdbee047ca93bef1426d6493f31f">clusteringop::getCentroids</a></div><div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;      (this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>,</div><div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;       this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7a41e675fd697f7b39e9abe546dc8a99">_matrixrowt_sumInstancesCluster</a>,</div><div class="line"><a name="l00248"></a><span class="lineno">  248</span>&#160;       this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>,</div><div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;       lpartition_clusters,</div><div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;       aivectorptinst_instances.begin(),</div><div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;       aivectorptinst_instances.end()</div><div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;       );</div><div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;    </div><div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;    this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">_cidx_numClusterNotNull</a> = </div><div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;      this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getNumRows() - lcidx_numClusterNull;</div><div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;    this-&gt;<a class="code" href="classgaencode_1_1_chromosome_base.html#abac472511083c6b8c3cb5208242d0d66">setValidString</a></div><div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;      ((<a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a>) this-&gt;_cidx_numClusterNotNull != <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getNumRows() );</div><div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;</div><div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160; 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   </div><div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;    <span class="keywordflow">for</span> ( <a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> luintidx_i = 0; </div><div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;          luintidx_i &lt; aivectorptinst_instances.size(); </div><div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;          luintidx_i++) </div><div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;      { <span class="comment">/*BEGIN FOR DIST*/</span></div><div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;        <a class="code" href="classdata_1_1_instance.html">data::Instance&lt;T_FEATURE&gt;</a>* liter_iInstance =</div><div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;          aivectorptinst_instances.at(luintidx_i);</div><div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160; 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           aifunc2p_dista</div><div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;            (this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getRow(li_k),</div><div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;             liter_iInstance-&gt;<a class="code" href="classdata_1_1_instance.html#aa6ee19c383a86228b3d134e42bdb6830">getFeatures</a>(),</div><div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;             liter_iInstance-&gt;<a class="code" href="classdata_1_1_instance.html#a90d1eaeb66cc1470bbfdb95434fdb761">getNumDimensions</a>() </div><div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;             );</div><div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;          this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a99f94f4f076742184f74f5ef92b0128c">_arrayT_distSumINSTiCLUSTE1k</a>[luintidx_i] += lt_distINSTiCLUSTERk;</div><div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;</div><div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160; 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this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">_arrayT_distMinINSTiCLUSTEk</a>[luintidx_i] ) {</div><div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;            this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">_arrayT_distMinINSTiCLUSTEk</a>[luintidx_i] = lt_distINSTiCLUSTERk;</div><div class="line"><a name="l00291"></a><span class="lineno">  291</span>&#160;            this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ac3d94523feb724763c12b80ca448426d">_arraycidx_idxMinINSTiCLUSTEk</a>[luintidx_i] = li_k;</div><div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;          }</div><div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;</div><div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;          <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a>(luintidx_i,li_k) = lt_distINSTiCLUSTERk;</div><div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160; 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     <a class="code" href="namespaceinterfacesse.html#a25f6950d589b92fd5bcf2007fb3fae19">interfacesse::sum</a></div><div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160;      (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">_arrayT_WCV</a>,</div><div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;       <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getNumRows()</div><div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;       );</div><div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;    this-&gt;<a class="code" href="classgaencode_1_1_chromosome_base.html#a0c0f339b486fb7d097d2afac2539ddc8">setObjetiveFunc</a>(lT_TWCV);</div><div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160;    </div><div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;    <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">_matrixrowt_sumInstancesClusterDelta</a>.<a class="code" href="classmat_1_1_matrix_row.html#a1070fba1c0ec0fbaa309f141817be412">initialize</a>();</div><div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;    </div><div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160;  }</div><div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;  </div><div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;   <span class="keyword">inline</span> </div><div class="line"><a name="l00311"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#acadf3ec87d9ae292a1f605c779fe772f">  311</a></span>&#160;  <a class="code" href="classmat_1_1_matrix_row.html">mat::MatrixRow&lt;T_FEATURE&gt;</a>&amp;  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#acadf3ec87d9ae292a1f605c779fe772f">getCentroids</a>()</div><div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160;  {</div><div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;    <span class="keywordflow">return</span> this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>;</div><div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;  }</div><div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;</div><div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;  <span class="keyword">inline</span> </div><div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;  T_METRIC  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a2f226c5ed1657a3c0b219676276ea384">getDistINSTiCLUSTE1k</a></div><div class="line"><a name="l00318"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a2f226c5ed1657a3c0b219676276ea384">  318</a></span>&#160;  (<a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> aiuintidx_idxInstance, T_CLUSTERIDX aicidx_clusterK)  </div><div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160;  {</div><div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160;    <span class="keywordflow">return</span> this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a>(aiuintidx_idxInstance,aicidx_clusterK);  </div><div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;  }</div><div class="line"><a name="l00322"></a><span class="lineno">  322</span>&#160;</div><div class="line"><a name="l00323"></a><span class="lineno">  323</span>&#160;  <span class="keyword">inline</span> </div><div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160;  T_METRIC  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a2f226c5ed1657a3c0b219676276ea384">getDistINSTiCLUSTE1k</a></div><div class="line"><a name="l00325"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a66fe88ae34ca664ec032e723a206c099">  325</a></span>&#160;  (<a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> aiuintidx_idxInstance, <a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> aiuintidx_clusterK)  </div><div class="line"><a name="l00326"></a><span class="lineno">  326</span>&#160;  {</div><div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;    <span class="keywordflow">return</span> this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a>(aiuintidx_idxInstance,aiuintidx_clusterK);  </div><div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;  }</div><div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;</div><div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;  <span class="keyword">inline</span></div><div class="line"><a name="l00331"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a60f2d83ec55bda124307cb659664d02c">  331</a></span>&#160;  T_METRIC <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a60f2d83ec55bda124307cb659664d02c">getDistSumINSTiCLUSTE1k</a>(<a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> aiuintidx_idxInstance)</div><div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160;  {</div><div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160;    <span class="keywordflow">return</span> this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a99f94f4f076742184f74f5ef92b0128c">_arrayT_distSumINSTiCLUSTE1k</a>[aiuintidx_idxInstance]; </div><div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160;  }</div><div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;</div><div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160;  <span class="keyword">inline</span></div><div class="line"><a name="l00337"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#ac83fc398fa895b5024c3303c61ed42b4">  337</a></span>&#160;  T_METRIC <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ac83fc398fa895b5024c3303c61ed42b4">getDistMaxINSTiCLUSTEk</a>(<a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> aiuintidx_idxInstance)</div><div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;  {</div><div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160;    <span class="keywordflow">return</span> this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">_arrayT_distMaxINSTiCLUSTEk</a>[aiuintidx_idxInstance]; </div><div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160;  }</div><div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;</div><div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160;  <span class="keyword">inline</span> </div><div class="line"><a name="l00343"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#ada077e6f0562cf9c6c3062cc372bed8b">  343</a></span>&#160;  T_CLUSTERIDX  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ada077e6f0562cf9c6c3062cc372bed8b">getIdxMinINSTiCLUSTEk</a>(<a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> aiuintidx_idxInstance)  </div><div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;  { </div><div class="line"><a name="l00345"></a><span class="lineno">  345</span>&#160;    <span class="keywordflow">return</span> this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ac3d94523feb724763c12b80ca448426d">_arraycidx_idxMinINSTiCLUSTEk</a>[aiuintidx_idxInstance];</div><div class="line"><a name="l00346"></a><span class="lineno">  346</span>&#160;  }</div><div class="line"><a name="l00347"></a><span class="lineno">  347</span>&#160;  </div><div class="line"><a name="l00348"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a4be6e80cbed64f18e49bd56e1ef5ecad">  348</a></span>&#160;  <span class="keyword">inline</span> T_CLUSTERIDX  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a4be6e80cbed64f18e49bd56e1ef5ecad">getNumClusterNotNull</a>()</div><div class="line"><a name="l00349"></a><span class="lineno">  349</span>&#160;  {</div><div class="line"><a name="l00350"></a><span class="lineno">  350</span>&#160;    <span class="keywordflow">return</span> this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">_cidx_numClusterNotNull</a>;</div><div class="line"><a name="l00351"></a><span class="lineno">  351</span>&#160;  }</div><div class="line"><a name="l00352"></a><span class="lineno">  352</span>&#160;</div><div class="line"><a name="l00353"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#acbdd9f16d05f82f5642548d8c7fd5f0f">  353</a></span>&#160;  <span class="keyword">inline</span> T_METRIC <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#acbdd9f16d05f82f5642548d8c7fd5f0f">getLegalityRation</a>()<span class="keyword"> const</span></div><div class="line"><a name="l00354"></a><span class="lineno">  354</span>&#160;<span class="keyword">  </span>{</div><div class="line"><a name="l00355"></a><span class="lineno">  355</span>&#160;    <span class="keywordflow">return</span>  (T_METRIC) this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">_cidx_numClusterNotNull</a> </div><div class="line"><a name="l00356"></a><span class="lineno">  356</span>&#160;      / (T_METRIC) this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getNumRows();</div><div class="line"><a name="l00357"></a><span class="lineno">  357</span>&#160;  }</div><div class="line"><a name="l00358"></a><span class="lineno">  358</span>&#160;</div><div class="line"><a name="l00359"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#abb2e758990360f3dd925411b70829a6c">  359</a></span>&#160;  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#abb2e758990360f3dd925411b70829a6c">getSelected</a>() </div><div class="line"><a name="l00360"></a><span class="lineno">  360</span>&#160;  {</div><div class="line"><a name="l00361"></a><span class="lineno">  361</span>&#160;    <span class="keywordflow">return</span> this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a554a7535ec6512c105d6078eed7af749">_b_selected</a>;</div><div class="line"><a name="l00362"></a><span class="lineno">  362</span>&#160;  }</div><div class="line"><a name="l00363"></a><span class="lineno">  363</span>&#160;</div><div class="line"><a name="l00364"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#ae56cb6d0fc896ac4e6b93f792445325b">  364</a></span>&#160;  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ae56cb6d0fc896ac4e6b93f792445325b">setSelected</a>(<span class="keywordtype">bool</span> aib_selected) </div><div class="line"><a name="l00365"></a><span class="lineno">  365</span>&#160;  {</div><div class="line"><a name="l00366"></a><span class="lineno">  366</span>&#160; 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<span class="stringliteral">&quot;:  IN(&quot;</span> &lt;&lt; geiinparam_verbose &lt;&lt; <span class="stringliteral">&quot;)\n&quot;</span></div><div class="line"><a name="l00381"></a><span class="lineno">  381</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;(input  ChromosomeIGKA&lt;&gt;: this[&quot;</span> &lt;&lt;  <span class="keyword">this</span></div><div class="line"><a name="l00382"></a><span class="lineno">  382</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;]\n&quot;</span>;</div><div class="line"><a name="l00383"></a><span class="lineno">  383</span>&#160;        std::ostringstream lostrstream_labelChromDelt;</div><div class="line"><a name="l00384"></a><span class="lineno">  384</span>&#160;        lostrstream_labelChromDelt</div><div class="line"><a name="l00385"></a><span class="lineno">  385</span>&#160;          &lt;&lt; <span class="stringliteral">&quot;&lt;SUMINSTANCESCLUSTERDELTA:&quot;</span></div><div class="line"><a name="l00386"></a><span class="lineno">  386</span>&#160; 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   <a class="code" href="namespaceinterfacesse.html#a9dd5fb43ad8a83ee5cb2f5ba1bb2085b">interfacesse::axpy</a></div><div class="line"><a name="l00400"></a><span class="lineno">  400</span>&#160;      (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">_matrixrowt_sumInstancesClusterDelta</a>.<a class="code" href="classmat_1_1_matrix_row.html#a5391a205367fbaac82a26ddc377a80af">getRow</a>(aicidx_oldAllen),</div><div class="line"><a name="l00401"></a><span class="lineno">  401</span>&#160;       T_FEATURE(-1),</div><div class="line"><a name="l00402"></a><span class="lineno">  402</span>&#160;       aiptinst_instance-&gt;<a class="code" href="classdata_1_1_instance.html#aa6ee19c383a86228b3d134e42bdb6830">getFeatures</a>(), </div><div class="line"><a name="l00403"></a><span class="lineno">  403</span>&#160;       aiptinst_instance-&gt;<a class="code" href="classdata_1_1_instance.html#a90d1eaeb66cc1470bbfdb95434fdb761">getNumDimensions</a>()</div><div class="line"><a name="l00404"></a><span class="lineno">  404</span>&#160;       );</div><div class="line"><a name="l00405"></a><span class="lineno">  405</span>&#160;</div><div class="line"><a name="l00406"></a><span class="lineno">  406</span>&#160;    <a class="code" href="namespaceinterfacesse.html#a9dd5fb43ad8a83ee5cb2f5ba1bb2085b">interfacesse::axpy</a></div><div class="line"><a name="l00407"></a><span class="lineno">  407</span>&#160;      (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">_matrixrowt_sumInstancesClusterDelta</a>.<a class="code" href="classmat_1_1_matrix_row.html#a5391a205367fbaac82a26ddc377a80af">getRow</a>(aicidx_newAllen),</div><div class="line"><a name="l00408"></a><span class="lineno">  408</span>&#160;       T_FEATURE(1),</div><div class="line"><a name="l00409"></a><span class="lineno">  409</span>&#160;       aiptinst_instance-&gt;<a class="code" href="classdata_1_1_instance.html#aa6ee19c383a86228b3d134e42bdb6830">getFeatures</a>(), </div><div class="line"><a name="l00410"></a><span class="lineno">  410</span>&#160;       aiptinst_instance-&gt;<a class="code" href="classdata_1_1_instance.html#a90d1eaeb66cc1470bbfdb95434fdb761">getNumDimensions</a>()</div><div class="line"><a name="l00411"></a><span class="lineno">  411</span>&#160;       );</div><div class="line"><a name="l00412"></a><span class="lineno">  412</span>&#160;</div><div class="line"><a name="l00413"></a><span class="lineno">  413</span>&#160;<span class="preprocessor">#ifdef __VERBOSE_YES</span></div><div class="line"><a name="l00414"></a><span class="lineno">  414</span>&#160;    <span class="keywordflow">if</span> ( geiinparam_verbose &lt;= geiinparam_verboseMax ) {</div><div class="line"><a name="l00415"></a><span class="lineno">  415</span>&#160;      std::cout &lt;&lt; lpc_labelFunc</div><div class="line"><a name="l00416"></a><span class="lineno">  416</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;: OUT(&quot;</span> &lt;&lt; geiinparam_verbose &lt;&lt; <span class="stringliteral">&quot;)\n&quot;</span>;</div><div class="line"><a name="l00417"></a><span class="lineno">  417</span>&#160;      std::ostringstream lostrstream_labelChromDelt;</div><div class="line"><a name="l00418"></a><span class="lineno">  418</span>&#160;        lostrstream_labelChromDelt</div><div class="line"><a name="l00419"></a><span class="lineno">  419</span>&#160;          &lt;&lt; <span class="stringliteral">&quot;&lt;SUMINSTANCESCLUSTERDELTA:&quot;</span></div><div class="line"><a name="l00420"></a><span class="lineno">  420</span>&#160;          &lt;&lt; lpc_labelFunc;</div><div class="line"><a name="l00421"></a><span class="lineno">  421</span>&#160;        <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">_matrixrowt_sumInstancesClusterDelta</a>.<a class="code" href="classmat_1_1_matrix_row.html#a156313f6aa515994b76321ff03780b16">print</a></div><div class="line"><a name="l00422"></a><span class="lineno">  422</span>&#160;          (std::cout,lostrstream_labelChromDelt.str().c_str(),<span class="charliteral">&#39;,&#39;</span>,<span class="charliteral">&#39;;&#39;</span>);</div><div class="line"><a name="l00423"></a><span class="lineno">  423</span>&#160;      std::cout &lt;&lt; std::endl;</div><div class="line"><a name="l00424"></a><span class="lineno">  424</span>&#160;    }</div><div class="line"><a name="l00425"></a><span class="lineno">  425</span>&#160;    --geiinparam_verbose;</div><div class="line"><a name="l00426"></a><span class="lineno">  426</span>&#160;<span class="preprocessor">#endif //__VERBOSE_YES</span></div><div class="line"><a name="l00427"></a><span class="lineno">  427</span>&#160;    </div><div class="line"><a name="l00428"></a><span class="lineno">  428</span>&#160;  }</div><div class="line"><a name="l00429"></a><span class="lineno">  429</span>&#160;  </div><div class="line"><a name="l00430"></a><span class="lineno">  430</span>&#160;  <span class="keywordtype">void</span> <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aec5c6d686dfb883a042323f162a685bc">incrementalUpdate</a></div><div class="line"><a name="l00431"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#aec5c6d686dfb883a042323f162a685bc">  431</a></span>&#160;  (std::vector</div><div class="line"><a name="l00432"></a><span class="lineno">  432</span>&#160;   &lt;<a class="code" href="classdata_1_1_instance.html">data::Instance&lt;T_FEATURE&gt;</a>* &gt;    &amp;aivectorptinst_instances,</div><div class="line"><a name="l00433"></a><span class="lineno">  433</span>&#160;   <a class="code" href="structdist_1_1_dist.html">dist::Dist&lt;T_METRIC,T_FEATURE&gt;</a>   &amp;aifunc2p_dista</div><div class="line"><a name="l00434"></a><span class="lineno">  434</span>&#160;   ) </div><div class="line"><a name="l00435"></a><span class="lineno">  435</span>&#160;  {</div><div class="line"><a name="l00436"></a><span class="lineno">  436</span>&#160;<span class="preprocessor">#ifdef __VERBOSE_YES</span></div><div class="line"><a name="l00437"></a><span class="lineno">  437</span>&#160;    <span class="keyword">const</span> <span class="keywordtype">char</span>* lpc_labelFunc = <span class="stringliteral">&quot;ChromosomeIGKA::incrementalUpdate&quot;</span>;</div><div class="line"><a name="l00438"></a><span class="lineno">  438</span>&#160;    ++geiinparam_verbose;</div><div class="line"><a name="l00439"></a><span class="lineno">  439</span>&#160;    <span class="keywordflow">if</span> ( geiinparam_verbose &lt;= geiinparam_verboseMax ) {</div><div class="line"><a name="l00440"></a><span class="lineno">  440</span>&#160;      std::cout &lt;&lt; lpc_labelFunc</div><div class="line"><a name="l00441"></a><span class="lineno">  441</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;:  IN(&quot;</span> &lt;&lt; geiinparam_verbose &lt;&lt; <span class="stringliteral">&quot;)\n&quot;</span></div><div class="line"><a name="l00442"></a><span class="lineno">  442</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;(input  ChromosomeIGKA&lt;&gt;: this[&quot;</span> &lt;&lt;  <span class="keyword">this</span></div><div class="line"><a name="l00443"></a><span class="lineno">  443</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;]\n&quot;</span>;</div><div class="line"><a name="l00444"></a><span class="lineno">  444</span>&#160;      <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html">ChromosomeIGKA</a></div><div class="line"><a name="l00445"></a><span class="lineno">  445</span>&#160;        &lt;T_CLUSTERIDX,</div><div class="line"><a name="l00446"></a><span class="lineno">  446</span>&#160;         T_METRIC,</div><div class="line"><a name="l00447"></a><span class="lineno">  447</span>&#160;         T_FEATURE,</div><div class="line"><a name="l00448"></a><span class="lineno">  448</span>&#160;         T_FEATURE_SUM,</div><div class="line"><a name="l00449"></a><span class="lineno">  449</span>&#160;         T_INSTANCES_CLUSTER_K&gt;</div><div class="line"><a name="l00450"></a><span class="lineno">  450</span>&#160;        <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#adc94b4738f53bfeaf64fbe69733eeb1b">::print</a>();</div><div class="line"><a name="l00451"></a><span class="lineno">  451</span>&#160;        std::cout &lt;&lt; <span class="charliteral">&#39;\n&#39;</span>;</div><div class="line"><a name="l00452"></a><span class="lineno">  452</span>&#160;        std::ostringstream lostrstream_labelChromDelt;</div><div class="line"><a name="l00453"></a><span class="lineno">  453</span>&#160;        lostrstream_labelChromDelt</div><div class="line"><a name="l00454"></a><span class="lineno">  454</span>&#160;          &lt;&lt; <span class="stringliteral">&quot;&lt;SUMINSTANCESCLUSTERDELTA:&quot;</span></div><div class="line"><a name="l00455"></a><span class="lineno">  455</span>&#160;          &lt;&lt; lpc_labelFunc;</div><div class="line"><a name="l00456"></a><span class="lineno">  456</span>&#160;        <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">_matrixrowt_sumInstancesClusterDelta</a>.<a class="code" href="classmat_1_1_matrix_row.html#a156313f6aa515994b76321ff03780b16">print</a></div><div class="line"><a name="l00457"></a><span class="lineno">  457</span>&#160;          (std::cout,lostrstream_labelChromDelt.str().c_str(),<span class="charliteral">&#39;,&#39;</span>,<span class="charliteral">&#39;;&#39;</span>);</div><div class="line"><a name="l00458"></a><span class="lineno">  458</span>&#160;        std::cout &lt;&lt;  <span class="stringliteral">&quot;\n)&quot;</span></div><div class="line"><a name="l00459"></a><span class="lineno">  459</span>&#160;                  &lt;&lt; std::endl;</div><div class="line"><a name="l00460"></a><span class="lineno">  460</span>&#160;    }</div><div class="line"><a name="l00461"></a><span class="lineno">  461</span>&#160;<span class="preprocessor">#endif //__VERBOSE_YES</span></div><div class="line"><a name="l00462"></a><span class="lineno">  462</span>&#160;    </div><div class="line"><a name="l00463"></a><span class="lineno">  463</span>&#160;   <span class="keyword">const</span>  T_CLUSTERIDX lcidx_numClusterK  = </div><div class="line"><a name="l00464"></a><span class="lineno">  464</span>&#160;      (T_CLUSTERIDX) <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getNumRows();</div><div class="line"><a name="l00465"></a><span class="lineno">  465</span>&#160;</div><div class="line"><a name="l00466"></a><span class="lineno">  466</span>&#160;    <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aebbbc640e621d86e5b286118e2c80798">_t_TWCVDelta</a> = 0;</div><div class="line"><a name="l00467"></a><span class="lineno">  467</span>&#160;</div><div class="line"><a name="l00468"></a><span class="lineno">  468</span>&#160;    <span class="keywordflow">for</span> (T_CLUSTERIDX lcidx_k = 0; lcidx_k &lt; lcidx_numClusterK; lcidx_k++) {</div><div class="line"><a name="l00469"></a><span class="lineno">  469</span>&#160;</div><div class="line"><a name="l00470"></a><span class="lineno">  470</span>&#160;      <span class="keywordflow">if</span> ( <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ae132b7c0e9861ca9b550a988383b0b70">_vectorb_changeCluster</a>[lcidx_k] != <span class="keyword">true</span> )  <span class="keywordflow">continue</span>;</div><div class="line"><a name="l00471"></a><span class="lineno">  471</span>&#160;</div><div class="line"><a name="l00472"></a><span class="lineno">  472</span>&#160;      T_INSTANCES_CLUSTER_K lick_oldNumInstancesClusterK = </div><div class="line"><a name="l00473"></a><span class="lineno">  473</span>&#160;        <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>[lcidx_k];</div><div class="line"><a name="l00474"></a><span class="lineno">  474</span>&#160;</div><div class="line"><a name="l00475"></a><span class="lineno">  475</span>&#160;      <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>[lcidx_k] +=</div><div class="line"><a name="l00476"></a><span class="lineno">  476</span>&#160;        <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a8594d1e35c89a9a9925f0a7ec8be56d7">_vectorT_numInstancesClusterKDelta</a>[lcidx_k];</div><div class="line"><a name="l00477"></a><span class="lineno">  477</span>&#160;      </div><div class="line"><a name="l00478"></a><span class="lineno">  478</span>&#160;      T_FEATURE_SUM* larrayrowt_sumInstCluster_k </div><div class="line"><a name="l00479"></a><span class="lineno">  479</span>&#160;         =  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7a41e675fd697f7b39e9abe546dc8a99">_matrixrowt_sumInstancesCluster</a>.<a class="code" href="classmat_1_1_matrix_row.html#a5391a205367fbaac82a26ddc377a80af">getRow</a>(lcidx_k);</div><div class="line"><a name="l00480"></a><span class="lineno">  480</span>&#160;       T_FEATURE_SUM* larrayrowt_sumInstClusterDelta_k </div><div class="line"><a name="l00481"></a><span class="lineno">  481</span>&#160;         =  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">_matrixrowt_sumInstancesClusterDelta</a>.<a class="code" href="classmat_1_1_matrix_row.html#a5391a205367fbaac82a26ddc377a80af">getRow</a>(lcidx_k);</div><div class="line"><a name="l00482"></a><span class="lineno">  482</span>&#160;       <a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> luintidx_i = 0;</div><div class="line"><a name="l00483"></a><span class="lineno">  483</span>&#160;       std::for_each</div><div class="line"><a name="l00484"></a><span class="lineno">  484</span>&#160;         (larrayrowt_sumInstCluster_k, </div><div class="line"><a name="l00485"></a><span class="lineno">  485</span>&#160;          larrayrowt_sumInstCluster_k + <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7a41e675fd697f7b39e9abe546dc8a99">_matrixrowt_sumInstancesCluster</a>.<a class="code" href="classmat_1_1_matrix_base.html#a70200414022ce1479b9ddc16102b12ae">getNumColumns</a>(),</div><div class="line"><a name="l00486"></a><span class="lineno">  486</span>&#160;          [&amp;] (T_FEATURE_SUM &amp;liter_sumInstCluster_ki) </div><div class="line"><a name="l00487"></a><span class="lineno">  487</span>&#160;          { </div><div class="line"><a name="l00488"></a><span class="lineno">  488</span>&#160;            liter_sumInstCluster_ki += larrayrowt_sumInstClusterDelta_k[luintidx_i]; </div><div class="line"><a name="l00489"></a><span class="lineno">  489</span>&#160;            larrayrowt_sumInstClusterDelta_k[luintidx_i++] = (T_FEATURE_SUM) 0;</div><div class="line"><a name="l00490"></a><span class="lineno">  490</span>&#160;          } </div><div class="line"><a name="l00491"></a><span class="lineno">  491</span>&#160;          );</div><div class="line"><a name="l00492"></a><span class="lineno">  492</span>&#160;       </div><div class="line"><a name="l00493"></a><span class="lineno">  493</span>&#160;       <span class="comment">/*MISING axpy long a long*/</span></div><div class="line"><a name="l00494"></a><span class="lineno">  494</span>&#160;       </div><div class="line"><a name="l00495"></a><span class="lineno">  495</span>&#160;      <span class="keywordflow">if</span> ( <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>[lcidx_k] &gt; 0 ) {</div><div class="line"><a name="l00496"></a><span class="lineno">  496</span>&#160;        <a class="code" href="namespacestats.html#a61ea16e97e098fc1598f4a2975cb0a24">stats::meanVector</a></div><div class="line"><a name="l00497"></a><span class="lineno">  497</span>&#160;          (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getRow(lcidx_k),</div><div class="line"><a name="l00498"></a><span class="lineno">  498</span>&#160;           <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>[lcidx_k],</div><div class="line"><a name="l00499"></a><span class="lineno">  499</span>&#160;           <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7a41e675fd697f7b39e9abe546dc8a99">_matrixrowt_sumInstancesCluster</a>.<a class="code" href="classmat_1_1_matrix_row.html#a5391a205367fbaac82a26ddc377a80af">getRow</a>(lcidx_k),</div><div class="line"><a name="l00500"></a><span class="lineno">  500</span>&#160;           lcidx_k</div><div class="line"><a name="l00501"></a><span class="lineno">  501</span>&#160;           );</div><div class="line"><a name="l00502"></a><span class="lineno">  502</span>&#160;      }</div><div class="line"><a name="l00503"></a><span class="lineno">  503</span>&#160;      </div><div class="line"><a name="l00504"></a><span class="lineno">  504</span>&#160;      <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ae132b7c0e9861ca9b550a988383b0b70">_vectorb_changeCluster</a>[lcidx_k] = <span class="keyword">false</span>;</div><div class="line"><a name="l00505"></a><span class="lineno">  505</span>&#160;      <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a8594d1e35c89a9a9925f0a7ec8be56d7">_vectorT_numInstancesClusterKDelta</a>[lcidx_k] = 0;</div><div class="line"><a name="l00506"></a><span class="lineno">  506</span>&#160;</div><div class="line"><a name="l00507"></a><span class="lineno">  507</span>&#160;      <span class="keywordflow">if</span> ( lick_oldNumInstancesClusterK == 0 &amp;&amp;  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>[lcidx_k] &gt; 0 )</div><div class="line"><a name="l00508"></a><span class="lineno">  508</span>&#160;        <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">_cidx_numClusterNotNull</a>++;</div><div class="line"><a name="l00509"></a><span class="lineno">  509</span>&#160;      <span class="keywordflow">else</span> <span class="keywordflow">if</span> (lick_oldNumInstancesClusterK &gt; 0 &amp;&amp; <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>[lcidx_k] == 0 )</div><div class="line"><a name="l00510"></a><span class="lineno">  510</span>&#160;        <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">_cidx_numClusterNotNull</a>--;</div><div class="line"><a name="l00511"></a><span class="lineno">  511</span>&#160;</div><div class="line"><a name="l00512"></a><span class="lineno">  512</span>&#160;      this-&gt;<a class="code" href="classgaencode_1_1_chromosome_base.html#abac472511083c6b8c3cb5208242d0d66">setValidString</a></div><div class="line"><a name="l00513"></a><span class="lineno">  513</span>&#160;        (this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">_cidx_numClusterNotNull</a> != lcidx_numClusterK );</div><div class="line"><a name="l00514"></a><span class="lineno">  514</span>&#160;      </div><div class="line"><a name="l00515"></a><span class="lineno">  515</span>&#160;      T_METRIC lT_oldWCVK = <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">_arrayT_WCV</a>[lcidx_k];</div><div class="line"><a name="l00516"></a><span class="lineno">  516</span>&#160;      <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">_arrayT_WCV</a>[lcidx_k] = 0;</div><div class="line"><a name="l00517"></a><span class="lineno">  517</span>&#160;      T_FEATURE* larrayrowt_centroid =  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getRow(lcidx_k);</div><div class="line"><a name="l00518"></a><span class="lineno">  518</span>&#160;      </div><div class="line"><a name="l00519"></a><span class="lineno">  519</span>&#160;      <span class="keywordflow">for</span> ( <a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> luintidx_i = 0; </div><div class="line"><a name="l00520"></a><span class="lineno">  520</span>&#160;            luintidx_i &lt; aivectorptinst_instances.size(); </div><div class="line"><a name="l00521"></a><span class="lineno">  521</span>&#160;            luintidx_i++) </div><div class="line"><a name="l00522"></a><span class="lineno">  522</span>&#160;        { <span class="comment">/*BEGIN FOR DIST*/</span></div><div class="line"><a name="l00523"></a><span class="lineno">  523</span>&#160;          <span class="keywordflow">if</span> ( this-&gt;<a class="code" href="classgaencode_1_1_chrom_fixed_length.html#ab9d0b01b82cd679c6232dcd78c13e9d2">getGene</a>(luintidx_i) == lcidx_k ) {</div><div class="line"><a name="l00524"></a><span class="lineno">  524</span>&#160;            <a class="code" href="classdata_1_1_instance.html">data::Instance&lt;T_FEATURE&gt;</a>* liter_iInstance = </div><div class="line"><a name="l00525"></a><span class="lineno">  525</span>&#160; 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              );</div><div class="line"><a name="l00532"></a><span class="lineno">  532</span>&#160;          }</div><div class="line"><a name="l00533"></a><span class="lineno">  533</span>&#160;        }</div><div class="line"><a name="l00534"></a><span class="lineno">  534</span>&#160;      this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aebbbc640e621d86e5b286118e2c80798">_t_TWCVDelta</a> +=  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">_arrayT_WCV</a>[lcidx_k] - lT_oldWCVK;</div><div class="line"><a name="l00535"></a><span class="lineno">  535</span>&#160;</div><div class="line"><a name="l00536"></a><span class="lineno">  536</span>&#160;      <span class="keywordflow">for</span> ( <a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> luintidx_i = 0; </div><div class="line"><a name="l00537"></a><span class="lineno">  537</span>&#160;            luintidx_i &lt; aivectorptinst_instances.size(); </div><div class="line"><a name="l00538"></a><span class="lineno">  538</span>&#160;            luintidx_i++) </div><div class="line"><a name="l00539"></a><span class="lineno">  539</span>&#160;        { <span class="comment">/*BEGIN FOR DIST*/</span></div><div class="line"><a name="l00540"></a><span class="lineno">  540</span>&#160;          T_METRIC lt_oldDistINSTiCLUSTERk = </div><div class="line"><a name="l00541"></a><span class="lineno">  541</span>&#160;            <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a>(luintidx_i,lcidx_k);</div><div class="line"><a name="l00542"></a><span class="lineno">  542</span>&#160;          <a class="code" href="classdata_1_1_instance.html">data::Instance&lt;T_FEATURE&gt;</a>* liter_iInstance = </div><div class="line"><a name="l00543"></a><span class="lineno">  543</span>&#160;            aivectorptinst_instances.at(luintidx_i);</div><div class="line"><a name="l00544"></a><span class="lineno">  544</span>&#160; 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this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">_arrayT_distMinINSTiCLUSTEk</a>[luintidx_i] ) {</div><div class="line"><a name="l00557"></a><span class="lineno">  557</span>&#160;            this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">_arrayT_distMinINSTiCLUSTEk</a>[luintidx_i] = lt_distINSTiCLUSTERk;</div><div class="line"><a name="l00558"></a><span class="lineno">  558</span>&#160;            this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ac3d94523feb724763c12b80ca448426d">_arraycidx_idxMinINSTiCLUSTEk</a>[luintidx_i] = lcidx_k;</div><div class="line"><a name="l00559"></a><span class="lineno">  559</span>&#160;          }</div><div class="line"><a name="l00560"></a><span class="lineno">  560</span>&#160;            </div><div class="line"><a name="l00561"></a><span class="lineno">  561</span>&#160;          <span class="keywordflow">if</span> (lt_distINSTiCLUSTERk &lt; lt_oldDistINSTiCLUSTERk  &amp;&amp;  </div><div class="line"><a name="l00562"></a><span class="lineno">  562</span>&#160;              this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a18814e038f39b810fbd122c7f3e78db6">_arraycidx_idxMaxINSTiCLUSTEk</a>[luintidx_i] == lcidx_k) {</div><div class="line"><a name="l00563"></a><span class="lineno">  563</span>&#160;</div><div class="line"><a name="l00564"></a><span class="lineno">  564</span>&#160;            this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">_arrayT_distMaxINSTiCLUSTEk</a>[luintidx_i] = 0.0;</div><div class="line"><a name="l00565"></a><span class="lineno">  565</span>&#160; </div><div class="line"><a name="l00566"></a><span class="lineno">  566</span>&#160;            <span class="keywordflow">for</span> (<a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> luintidx_l = 0; luintidx_l &lt; this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getNumRows(); luintidx_l++) {</div><div class="line"><a name="l00567"></a><span class="lineno">  567</span>&#160;              <span class="keywordflow">if</span> (this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">_arrayT_distMaxINSTiCLUSTEk</a>[luintidx_i] &lt; <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a>(luintidx_i,luintidx_l)) {</div><div class="line"><a name="l00568"></a><span class="lineno">  568</span>&#160;                this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">_arrayT_distMaxINSTiCLUSTEk</a>[luintidx_i] = <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a>(luintidx_i,luintidx_l);</div><div class="line"><a name="l00569"></a><span class="lineno">  569</span>&#160;                this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a18814e038f39b810fbd122c7f3e78db6">_arraycidx_idxMaxINSTiCLUSTEk</a>[luintidx_i] = luintidx_l;</div><div class="line"><a name="l00570"></a><span class="lineno">  570</span>&#160; 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           <span class="keywordflow">for</span> (<a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> luintidx_l = 0; luintidx_l &lt; this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.getNumRows(); luintidx_l++) {</div><div class="line"><a name="l00578"></a><span class="lineno">  578</span>&#160;              <span class="keywordflow">if</span> (this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">_arrayT_distMinINSTiCLUSTEk</a>[luintidx_i] &gt; <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a>(luintidx_i,luintidx_l)) {</div><div class="line"><a name="l00579"></a><span class="lineno">  579</span>&#160;                this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">_arrayT_distMinINSTiCLUSTEk</a>[luintidx_i] = <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a>(luintidx_i,luintidx_l);</div><div class="line"><a name="l00580"></a><span class="lineno">  580</span>&#160;                this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ac3d94523feb724763c12b80ca448426d">_arraycidx_idxMinINSTiCLUSTEk</a>[luintidx_i] = luintidx_l;</div><div class="line"><a name="l00581"></a><span class="lineno">  581</span>&#160;              }</div><div class="line"><a name="l00582"></a><span class="lineno">  582</span>&#160;            }</div><div class="line"><a name="l00583"></a><span class="lineno">  583</span>&#160;          }</div><div class="line"><a name="l00584"></a><span class="lineno">  584</span>&#160;          this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a99f94f4f076742184f74f5ef92b0128c">_arrayT_distSumINSTiCLUSTE1k</a>[lcidx_k] += </div><div class="line"><a name="l00585"></a><span class="lineno">  585</span>&#160;            lt_distINSTiCLUSTERk - lt_oldDistINSTiCLUSTERk;</div><div class="line"><a name="l00586"></a><span class="lineno">  586</span>&#160;        }</div><div class="line"><a name="l00587"></a><span class="lineno">  587</span>&#160; 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 <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html">ChromosomeIGKA</a></div><div class="line"><a name="l00611"></a><span class="lineno">  611</span>&#160;  &lt;T_CLUSTERIDX,</div><div class="line"><a name="l00612"></a><span class="lineno">  612</span>&#160;   T_METRIC,</div><div class="line"><a name="l00613"></a><span class="lineno">  613</span>&#160;   T_FEATURE,</div><div class="line"><a name="l00614"></a><span class="lineno">  614</span>&#160;   T_FEATURE_SUM,</div><div class="line"><a name="l00615"></a><span class="lineno">  615</span>&#160;   T_INSTANCES_CLUSTER_K&gt;&amp; </div><div class="line"><a name="l00616"></a><span class="lineno">  616</span>&#160;  <span class="keyword">operator</span>=</div><div class="line"><a name="l00617"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a9a928f5d3ee09d223f2f8aa3e73141b9">  617</a></span>&#160;  (<span class="keyword">const</span> <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html">ChromosomeIGKA</a></div><div class="line"><a name="l00618"></a><span class="lineno">  618</span>&#160; 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               &lt;&lt; std::endl;</div><div class="line"><a name="l00634"></a><span class="lineno">  634</span>&#160;    }</div><div class="line"><a name="l00635"></a><span class="lineno">  635</span>&#160;<span class="preprocessor">#endif //__VERBOSE_YES</span></div><div class="line"><a name="l00636"></a><span class="lineno">  636</span>&#160;    </div><div class="line"><a name="l00637"></a><span class="lineno">  637</span>&#160;    <span class="keywordflow">if</span> ( <span class="keyword">this</span> != &amp;aichrom_b ) {</div><div class="line"><a name="l00638"></a><span class="lineno">  638</span>&#160;      <a class="code" href="classgaencode_1_1_chrom_fixed_length.html#ad0d128acd8d117278b0779b7a9714a18">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;::operator=</a>(aichrom_b);</div><div class="line"><a name="l00639"></a><span class="lineno">  639</span>&#160;</div><div class="line"><a name="l00640"></a><span class="lineno">  640</span>&#160;      this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a> = aichrom_b._matrixrowt_centroids;</div><div class="line"><a name="l00641"></a><span class="lineno">  641</span>&#160; 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     (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">_arrayT_WCV</a>,</div><div class="line"><a name="l00647"></a><span class="lineno">  647</span>&#160;       aichrom_b._arrayT_WCV,</div><div class="line"><a name="l00648"></a><span class="lineno">  648</span>&#160;       this-&gt;_matrixrowt_centroids.getNumRows() </div><div class="line"><a name="l00649"></a><span class="lineno">  649</span>&#160;       );</div><div class="line"><a name="l00650"></a><span class="lineno">  650</span>&#160;      </div><div class="line"><a name="l00651"></a><span class="lineno">  651</span>&#160;    <a class="code" href="namespaceinterfacesse.html#a925f44ed84d40e9af5050fa0e1373396">interfacesse::copy</a></div><div class="line"><a name="l00652"></a><span class="lineno">  652</span>&#160;      (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a99f94f4f076742184f74f5ef92b0128c">_arrayT_distSumINSTiCLUSTE1k</a>,</div><div class="line"><a name="l00653"></a><span class="lineno">  653</span>&#160;       aichrom_b._arrayT_distSumINSTiCLUSTE1k,</div><div class="line"><a name="l00654"></a><span class="lineno">  654</span>&#160;       aichrom_b.getStringSize()</div><div class="line"><a name="l00655"></a><span class="lineno">  655</span>&#160;       );</div><div class="line"><a name="l00656"></a><span class="lineno">  656</span>&#160;</div><div class="line"><a name="l00657"></a><span class="lineno">  657</span>&#160;    <a class="code" href="namespaceinterfacesse.html#a925f44ed84d40e9af5050fa0e1373396">interfacesse::copy</a></div><div class="line"><a name="l00658"></a><span class="lineno">  658</span>&#160;      (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">_arrayT_distMaxINSTiCLUSTEk</a>,</div><div class="line"><a name="l00659"></a><span class="lineno">  659</span>&#160;       aichrom_b._arrayT_distMaxINSTiCLUSTEk,</div><div class="line"><a name="l00660"></a><span class="lineno">  660</span>&#160;       aichrom_b.getStringSize()</div><div class="line"><a name="l00661"></a><span class="lineno">  661</span>&#160;       );</div><div class="line"><a name="l00662"></a><span class="lineno">  662</span>&#160;</div><div class="line"><a name="l00663"></a><span class="lineno">  663</span>&#160;    <a class="code" href="namespaceinterfacesse.html#a925f44ed84d40e9af5050fa0e1373396">interfacesse::copy</a></div><div class="line"><a name="l00664"></a><span class="lineno">  664</span>&#160;      (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">_arrayT_distMinINSTiCLUSTEk</a>,</div><div class="line"><a name="l00665"></a><span class="lineno">  665</span>&#160;       aichrom_b._arrayT_distMinINSTiCLUSTEk,</div><div class="line"><a name="l00666"></a><span class="lineno">  666</span>&#160;       aichrom_b.getStringSize()</div><div class="line"><a name="l00667"></a><span class="lineno">  667</span>&#160;       );</div><div class="line"><a name="l00668"></a><span class="lineno">  668</span>&#160;</div><div class="line"><a name="l00669"></a><span class="lineno">  669</span>&#160; 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 &lt;T_CLUSTERIDX,</div><div class="line"><a name="l00713"></a><span class="lineno">  713</span>&#160;   T_METRIC,</div><div class="line"><a name="l00714"></a><span class="lineno">  714</span>&#160;   T_FEATURE,</div><div class="line"><a name="l00715"></a><span class="lineno">  715</span>&#160;   T_FEATURE_SUM,</div><div class="line"><a name="l00716"></a><span class="lineno">  716</span>&#160;   T_INSTANCES_CLUSTER_K&gt;&amp;</div><div class="line"><a name="l00717"></a><span class="lineno">  717</span>&#160;  <span class="keyword">operator</span>=</div><div class="line"><a name="l00718"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab6ad6b5d68c383bdf5d6807dd9727f74">  718</a></span>&#160;  (<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html">ChromosomeIGKA</a></div><div class="line"><a name="l00719"></a><span class="lineno">  719</span>&#160;   &lt;T_CLUSTERIDX,</div><div class="line"><a name="l00720"></a><span class="lineno">  720</span>&#160; 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   </div><div class="line"><a name="l00749"></a><span class="lineno">  749</span>&#160;      aichrom_b._arrayT_WCV = NULL;</div><div class="line"><a name="l00750"></a><span class="lineno">  750</span>&#160;      aichrom_b._lmatrixT_distINSTiCLUSTE1k = NULL;</div><div class="line"><a name="l00751"></a><span class="lineno">  751</span>&#160;      aichrom_b._arrayT_distSumINSTiCLUSTE1k = NULL;</div><div class="line"><a name="l00752"></a><span class="lineno">  752</span>&#160;      aichrom_b._arrayT_distMaxINSTiCLUSTEk = NULL; </div><div class="line"><a name="l00753"></a><span class="lineno">  753</span>&#160;      aichrom_b._arrayT_distMinINSTiCLUSTEk = NULL;</div><div class="line"><a name="l00754"></a><span class="lineno">  754</span>&#160;      aichrom_b._arraycidx_idxMinINSTiCLUSTEk = NULL;</div><div class="line"><a name="l00755"></a><span class="lineno">  755</span>&#160;      aichrom_b._arraycidx_idxMaxINSTiCLUSTEk = NULL;</div><div class="line"><a name="l00756"></a><span class="lineno">  756</span>&#160;      </div><div class="line"><a name="l00757"></a><span class="lineno">  757</span>&#160; </div><div class="line"><a name="l00758"></a><span class="lineno">  758</span>&#160;    }</div><div class="line"><a name="l00759"></a><span class="lineno">  759</span>&#160;</div><div class="line"><a name="l00760"></a><span class="lineno">  760</span>&#160;    <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div><div class="line"><a name="l00761"></a><span class="lineno">  761</span>&#160;  }</div><div class="line"><a name="l00762"></a><span class="lineno">  762</span>&#160;</div><div class="line"><a name="l00763"></a><span class="lineno">  763</span>&#160;  <span class="keyword">virtual</span> <span class="keywordtype">void</span>  <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#adc94b4738f53bfeaf64fbe69733eeb1b">print</a></div><div class="line"><a name="l00764"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#adc94b4738f53bfeaf64fbe69733eeb1b">  764</a></span>&#160;  (std::ostream &amp;os=std::cout,</div><div class="line"><a name="l00765"></a><span class="lineno">  765</span>&#160;   <span class="keyword">const</span> <span class="keywordtype">char</span>* aipc_label = <span class="stringliteral">&quot;&quot;</span>,</div><div class="line"><a name="l00766"></a><span class="lineno">  766</span>&#160;   <span class="keyword">const</span> <span class="keywordtype">char</span> aic_delimCoef=<span class="charliteral">&#39;,&#39;</span>,</div><div class="line"><a name="l00767"></a><span class="lineno">  767</span>&#160;   <span class="keyword">const</span> <span class="keywordtype">char</span> aic_delimRow=<span class="charliteral">&#39;;&#39;</span></div><div class="line"><a name="l00768"></a><span class="lineno">  768</span>&#160;   ) <span class="keyword">const</span></div><div class="line"><a name="l00769"></a><span class="lineno">  769</span>&#160;  {</div><div class="line"><a name="l00770"></a><span class="lineno">  770</span>&#160;</div><div class="line"><a name="l00771"></a><span class="lineno">  771</span>&#160;    std::ostringstream lostrstream_labelChrom;</div><div class="line"><a name="l00772"></a><span class="lineno">  772</span>&#160;    lostrstream_labelChrom</div><div class="line"><a name="l00773"></a><span class="lineno">  773</span>&#160;      &lt;&lt; aipc_label</div><div class="line"><a name="l00774"></a><span class="lineno">  774</span>&#160;      &lt;&lt;  <span class="stringliteral">&quot;:e&quot;</span> &lt;&lt; aic_delimCoef &lt;&lt; this-&gt;<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#acbdd9f16d05f82f5642548d8c7fd5f0f">getLegalityRation</a>();</div><div class="line"><a name="l00775"></a><span class="lineno">  775</span>&#160;      </div><div class="line"><a name="l00776"></a><span class="lineno">  776</span>&#160;    <a class="code" href="classgaencode_1_1_chrom_fixed_length.html#a2d0b4e4d46c2f224ce34cf795407b407">gaencode::ChromFixedLength&lt;T_CLUSTERIDX,T_METRIC&gt;::</a></div><div class="line"><a name="l00777"></a><span class="lineno">  777</span>&#160;<a class="code" href="classgaencode_1_1_chrom_fixed_length.html#a2d0b4e4d46c2f224ce34cf795407b407">      print</a>(os,lostrstream_labelChrom.str().c_str(),aic_delimCoef,aic_delimRow);</div><div class="line"><a name="l00778"></a><span class="lineno">  778</span>&#160;    os &lt;&lt; <span class="charliteral">&#39;\n&#39;</span>;</div><div class="line"><a name="l00779"></a><span class="lineno">  779</span>&#160;    std::ostringstream lostrstream_labelChromCent;</div><div class="line"><a name="l00780"></a><span class="lineno">  780</span>&#160;    lostrstream_labelChromCent</div><div class="line"><a name="l00781"></a><span class="lineno">  781</span>&#160;      &lt;&lt; <span class="stringliteral">&quot;&lt;CENTROIDS:CHROMOSOMEFGKA:&quot;</span></div><div class="line"><a name="l00782"></a><span class="lineno">  782</span>&#160;      &lt;&lt; aipc_label;</div><div class="line"><a name="l00783"></a><span class="lineno">  783</span>&#160;    <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>.print(os,lostrstream_labelChromCent.str().c_str(),aic_delimCoef,aic_delimRow);</div><div class="line"><a name="l00784"></a><span class="lineno">  784</span>&#160;</div><div class="line"><a name="l00785"></a><span class="lineno">  785</span>&#160;  }</div><div class="line"><a name="l00786"></a><span class="lineno">  786</span>&#160;  </div><div class="line"><a name="l00787"></a><span class="lineno">  787</span>&#160;<span class="keyword">protected</span>:</div><div class="line"><a name="l00788"></a><span class="lineno">  788</span>&#160;</div><div class="line"><a name="l00789"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">  789</a></span>&#160;  <a class="code" href="classmat_1_1_matrix_row.html">mat::MatrixRow&lt;T_FEATURE&gt;</a>     <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">_matrixrowt_centroids</a>;</div><div class="line"><a name="l00790"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7a41e675fd697f7b39e9abe546dc8a99">  790</a></span>&#160;  <a class="code" href="classmat_1_1_matrix_row.html">mat::MatrixRow&lt;T_FEATURE_SUM&gt;</a> <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7a41e675fd697f7b39e9abe546dc8a99">_matrixrowt_sumInstancesCluster</a>;</div><div class="line"><a name="l00791"></a><span class="lineno">  791</span>&#160;  std::vector</div><div class="line"><a name="l00792"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">  792</a></span>&#160;  &lt;T_INSTANCES_CLUSTER_K&gt; <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">_vectorT_numInstancesClusterK</a>;</div><div class="line"><a name="l00793"></a><span class="lineno">  793</span>&#160;  </div><div class="line"><a name="l00794"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">  794</a></span>&#160;  T_METRIC                *<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">_arrayT_WCV</a>;</div><div class="line"><a name="l00795"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">  795</a></span>&#160;  <a class="code" href="classmat_1_1_matrix_row.html">mat::MatrixRow&lt;T_METRIC&gt;</a>          <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">_matrixrowt_distINSTiCLUSTE1k</a>;</div><div class="line"><a name="l00796"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a99f94f4f076742184f74f5ef92b0128c">  796</a></span>&#160;  T_METRIC                  *<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a99f94f4f076742184f74f5ef92b0128c">_arrayT_distSumINSTiCLUSTE1k</a>; </div><div class="line"><a name="l00797"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">  797</a></span>&#160;  T_METRIC                  *<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">_arrayT_distMaxINSTiCLUSTEk</a>; </div><div class="line"><a name="l00798"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">  798</a></span>&#160;  T_METRIC                  *<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">_arrayT_distMinINSTiCLUSTEk</a>;</div><div class="line"><a name="l00799"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#ac3d94523feb724763c12b80ca448426d">  799</a></span>&#160;  T_CLUSTERIDX     *<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ac3d94523feb724763c12b80ca448426d">_arraycidx_idxMinINSTiCLUSTEk</a>;</div><div class="line"><a name="l00800"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a18814e038f39b810fbd122c7f3e78db6">  800</a></span>&#160;  T_CLUSTERIDX     *<a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a18814e038f39b810fbd122c7f3e78db6">_arraycidx_idxMaxINSTiCLUSTEk</a>;</div><div class="line"><a name="l00801"></a><span class="lineno">  801</span>&#160;</div><div class="line"><a name="l00802"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">  802</a></span>&#160;  <a class="code" href="classmat_1_1_matrix_row.html">mat::MatrixRow&lt;T_FEATURE_SUM&gt;</a> <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">_matrixrowt_sumInstancesClusterDelta</a>;</div><div class="line"><a name="l00803"></a><span class="lineno">  803</span>&#160;  std::vector</div><div class="line"><a name="l00804"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a8594d1e35c89a9a9925f0a7ec8be56d7">  804</a></span>&#160;  &lt;T_INSTANCES_CLUSTER_K&gt; <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a8594d1e35c89a9a9925f0a7ec8be56d7">_vectorT_numInstancesClusterKDelta</a>;</div><div class="line"><a name="l00805"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#ae132b7c0e9861ca9b550a988383b0b70">  805</a></span>&#160;  std::vector&lt;bool&gt;       <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ae132b7c0e9861ca9b550a988383b0b70">_vectorb_changeCluster</a>;</div><div class="line"><a name="l00806"></a><span class="lineno">  806</span>&#160;</div><div class="line"><a name="l00807"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">  807</a></span>&#160;  T_CLUSTERIDX     <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">_cidx_numClusterNotNull</a>;</div><div class="line"><a name="l00808"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#aebbbc640e621d86e5b286118e2c80798">  808</a></span>&#160;  T_METRIC                <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#aebbbc640e621d86e5b286118e2c80798">_t_TWCVDelta</a>;</div><div class="line"><a name="l00809"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_i_g_k_a.html#a554a7535ec6512c105d6078eed7af749">  809</a></span>&#160;  <span class="keywordtype">bool</span>                    <a class="code" href="classgaencode_1_1_chromosome_i_g_k_a.html#a554a7535ec6512c105d6078eed7af749">_b_selected</a>; <span class="comment">/*used*/</span></div><div class="line"><a name="l00810"></a><span class="lineno">  810</span>&#160;}; <span class="comment">/*END  ChromosomeIGKA */</span></div><div class="line"><a name="l00811"></a><span class="lineno">  811</span>&#160;</div><div class="line"><a name="l00812"></a><span class="lineno">  812</span>&#160;} <span class="comment">/*END namespace gaencode*/</span></div><div class="line"><a name="l00813"></a><span class="lineno">  813</span>&#160;</div><div class="line"><a name="l00814"></a><span class="lineno">  814</span>&#160;<span class="preprocessor">#endif  </span><span class="comment">/* CHROMOSOME_IGKA_HPP */</span><span class="preprocessor"></span></div><div class="ttc" id="classpartition_1_1_partition_label_html"><div class="ttname"><a href="classpartition_1_1_partition_label.html">partition::PartitionLabel</a></div><div class="ttdoc">Partition of instances with label string assigned previous.</div><div class="ttdef"><b>Definition:</b> <a href="partition__label_8hpp_source.html#l00036">partition_label.hpp:36</a></div></div>
<div class="ttc" id="classgaencode_1_1_chrom_fixed_length_html_aac60dd08cf0d29f08845a6381d84edad"><div class="ttname"><a href="classgaencode_1_1_chrom_fixed_length.html#aac60dd08cf0d29f08845a6381d84edad">gaencode::ChromFixedLength&lt; T_CLUSTERIDX, T_METRIC &gt;::getStringSize</a></div><div class="ttdeci">virtual const uintidx getStringSize() const</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__fixedlength_8hpp_source.html#l00187">chromosome_fixedlength.hpp:187</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a2f226c5ed1657a3c0b219676276ea384"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a2f226c5ed1657a3c0b219676276ea384">gaencode::ChromosomeIGKA::getDistINSTiCLUSTE1k</a></div><div class="ttdeci">T_METRIC getDistINSTiCLUSTE1k(uintidx aiuintidx_idxInstance, T_CLUSTERIDX aicidx_clusterK)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00318">chromosome_igka.hpp:318</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_base_html_afc3f7dbd72d88157ba37eb8bea29478e"><div class="ttname"><a href="classgaencode_1_1_chromosome_base.html#afc3f7dbd72d88157ba37eb8bea29478e">gaencode::ChromosomeBase::getObjetiveFunc</a></div><div class="ttdeci">const T_METRIC getObjetiveFunc() const</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__base_8hpp_source.html#l00113">chromosome_base.hpp:113</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_ab4a9fe243d936763a6dfcc8d56bb2209"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#ab4a9fe243d936763a6dfcc8d56bb2209">gaencode::ChromosomeIGKA::_cidx_numClusterNotNull</a></div><div class="ttdeci">T_CLUSTERIDX _cidx_numClusterNotNull</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00807">chromosome_igka.hpp:807</a></div></div>
<div class="ttc" id="classmat_1_1_matrix_row_html_a1070fba1c0ec0fbaa309f141817be412"><div class="ttname"><a href="classmat_1_1_matrix_row.html#a1070fba1c0ec0fbaa309f141817be412">mat::MatrixRow::initialize</a></div><div class="ttdeci">void initialize(const T_FEATURE ait_value=T_FEATURE(0))</div><div class="ttdef"><b>Definition:</b> <a href="matrix_8hpp_source.html#l00129">matrix.hpp:129</a></div></div>
<div class="ttc" id="namespacestats_html_a61ea16e97e098fc1598f4a2975cb0a24"><div class="ttname"><a href="namespacestats.html#a61ea16e97e098fc1598f4a2975cb0a24">stats::meanVector</a></div><div class="ttdeci">void meanVector(T_FEATURE *aoarrayt_mean, const T_FEATURE_NUM ait_feactureNum, const T_FEATURE_SUM *aiarrayt_feactureSum, const uintidx aiu_idxVector=0)</div><div class="ttdoc">￼Calculate average of a vector</div><div class="ttdef"><b>Definition:</b> <a href="stats__instances_8hpp_source.html#l00055">stats_instances.hpp:55</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_aebbbc640e621d86e5b286118e2c80798"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#aebbbc640e621d86e5b286118e2c80798">gaencode::ChromosomeIGKA::_t_TWCVDelta</a></div><div class="ttdeci">T_METRIC _t_TWCVDelta</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00808">chromosome_igka.hpp:808</a></div></div>
<div class="ttc" id="matrix_8hpp_html"><div class="ttname"><a href="matrix_8hpp.html">matrix.hpp</a></div><div class="ttdoc">matrix</div></div>
<div class="ttc" id="common_8hpp_html_a3f6c33fb604556cdc425e7aa2289d009"><div class="ttname"><a href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a></div><div class="ttdeci">uint32_t uintidx</div><div class="ttdef"><b>Definition:</b> <a href="common_8hpp_source.html#l00020">common.hpp:20</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_ae56cb6d0fc896ac4e6b93f792445325b"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#ae56cb6d0fc896ac4e6b93f792445325b">gaencode::ChromosomeIGKA::setSelected</a></div><div class="ttdeci">void setSelected(bool aib_selected)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00364">chromosome_igka.hpp:364</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_aa04aa2c3dd73fe739fe3ba934f8d5b7a"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#aa04aa2c3dd73fe739fe3ba934f8d5b7a">gaencode::ChromosomeIGKA::_vectorT_numInstancesClusterK</a></div><div class="ttdeci">std::vector&lt; T_INSTANCES_CLUSTER_K &gt; _vectorT_numInstancesClusterK</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00792">chromosome_igka.hpp:792</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_acbdd9f16d05f82f5642548d8c7fd5f0f"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#acbdd9f16d05f82f5642548d8c7fd5f0f">gaencode::ChromosomeIGKA::getLegalityRation</a></div><div class="ttdeci">T_METRIC getLegalityRation() const</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00353">chromosome_igka.hpp:353</a></div></div>
<div class="ttc" id="partition__label_8hpp_html"><div class="ttname"><a href="partition__label_8hpp.html">partition_label.hpp</a></div><div class="ttdoc">Partition based on the label of the instances.</div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_base_html_a0c0f339b486fb7d097d2afac2539ddc8"><div class="ttname"><a href="classgaencode_1_1_chromosome_base.html#a0c0f339b486fb7d097d2afac2539ddc8">gaencode::ChromosomeBase::setObjetiveFunc</a></div><div class="ttdeci">void setObjetiveFunc(T_METRIC ait_objetiveFunc)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__base_8hpp_source.html#l00108">chromosome_base.hpp:108</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_adc94b4738f53bfeaf64fbe69733eeb1b"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#adc94b4738f53bfeaf64fbe69733eeb1b">gaencode::ChromosomeIGKA::print</a></div><div class="ttdeci">virtual void print(std::ostream &amp;os=std::cout, const char *aipc_label=&quot;&quot;, const char aic_delimCoef=',', const char aic_delimRow=';') const</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00764">chromosome_igka.hpp:764</a></div></div>
<div class="ttc" id="classgaencode_1_1_chrom_fixed_length_html_ab9d0b01b82cd679c6232dcd78c13e9d2"><div class="ttname"><a href="classgaencode_1_1_chrom_fixed_length.html#ab9d0b01b82cd679c6232dcd78c13e9d2">gaencode::ChromFixedLength&lt; T_CLUSTERIDX, T_METRIC &gt;::getGene</a></div><div class="ttdeci">virtual const T_CLUSTERIDX getGene(const uintidx aiuintidx_idxGene) const</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__fixedlength_8hpp_source.html#l00221">chromosome_fixedlength.hpp:221</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a70be801d354650e379efd94bd338751d"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a70be801d354650e379efd94bd338751d">gaencode::ChromosomeIGKA::initialize</a></div><div class="ttdeci">void initialize(const std::vector&lt; data::Instance&lt; T_FEATURE &gt; * &gt; &amp;aivectorptinst_instances, dist::Dist&lt; T_METRIC, T_FEATURE &gt; &amp;aifunc2p_dista)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00220">chromosome_igka.hpp:220</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a17dc1b71c3122a44e3159ec4fe2e6a5c"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a17dc1b71c3122a44e3159ec4fe2e6a5c">gaencode::ChromosomeIGKA::_arrayT_WCV</a></div><div class="ttdeci">T_METRIC * _arrayT_WCV</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00794">chromosome_igka.hpp:794</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a04e8fbb9bd93fbc4a2bf01c74fdcdca4"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a04e8fbb9bd93fbc4a2bf01c74fdcdca4">gaencode::ChromosomeIGKA::accumulateUpdate</a></div><div class="ttdeci">void accumulateUpdate(T_CLUSTERIDX aicidx_newAllen, T_CLUSTERIDX aicidx_oldAllen, data::Instance&lt; T_FEATURE &gt; *aiptinst_instance)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00370">chromosome_igka.hpp:370</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_abb2e758990360f3dd925411b70829a6c"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#abb2e758990360f3dd925411b70829a6c">gaencode::ChromosomeIGKA::getSelected</a></div><div class="ttdeci">bool getSelected()</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00359">chromosome_igka.hpp:359</a></div></div>
<div class="ttc" id="classgaencode_1_1_chrom_fixed_length_html_a4d1d15f6be16c0d0a23824033993aa71"><div class="ttname"><a href="classgaencode_1_1_chrom_fixed_length.html#a4d1d15f6be16c0d0a23824033993aa71">gaencode::ChromFixedLength&lt; T_CLUSTERIDX, T_METRIC &gt;::getString</a></div><div class="ttdeci">virtual T_CLUSTERIDX * getString()</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__fixedlength_8hpp_source.html#l00201">chromosome_fixedlength.hpp:201</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html">gaencode::ChromosomeIGKA</a></div><div class="ttdoc">Chromosome IGKA.</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00045">chromosome_igka.hpp:45</a></div></div>
<div class="ttc" id="namespaceinterfacesse_html_a925f44ed84d40e9af5050fa0e1373396"><div class="ttname"><a href="namespaceinterfacesse.html#a925f44ed84d40e9af5050fa0e1373396">interfacesse::copy</a></div><div class="ttdeci">void copy(T *aoarrayt_y, const T *aiarrayt_x, const uintidx aiui_lengthArray)</div><div class="ttdoc">copy array aoarrayt_x in aoarrayt_y of type T</div><div class="ttdef"><b>Definition:</b> <a href="interface__level1_8hpp_source.html#l00069">interface_level1.hpp:69</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_ac83fc398fa895b5024c3303c61ed42b4"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#ac83fc398fa895b5024c3303c61ed42b4">gaencode::ChromosomeIGKA::getDistMaxINSTiCLUSTEk</a></div><div class="ttdeci">T_METRIC getDistMaxINSTiCLUSTEk(uintidx aiuintidx_idxInstance)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00337">chromosome_igka.hpp:337</a></div></div>
<div class="ttc" id="classmat_1_1_matrix_row_html"><div class="ttname"><a href="classmat_1_1_matrix_row.html">mat::MatrixRow</a></div><div class="ttdoc">Matrix store items for row.</div><div class="ttdef"><b>Definition:</b> <a href="matrix_8hpp_source.html#l00046">matrix.hpp:46</a></div></div>
<div class="ttc" id="clustering__operator__centroids_8hpp_html"><div class="ttname"><a href="clustering__operator__centroids_8hpp.html">clustering_operator_centroids.hpp</a></div><div class="ttdoc">clustering operator centroids</div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a57eb24b8fdb94fb0680815bcfb40b665"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a57eb24b8fdb94fb0680815bcfb40b665">gaencode::ChromosomeIGKA::ChromosomeIGKA</a></div><div class="ttdeci">ChromosomeIGKA(const uintidx aiuintidx_numClusterK)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00050">chromosome_igka.hpp:50</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a99f94f4f076742184f74f5ef92b0128c"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a99f94f4f076742184f74f5ef92b0128c">gaencode::ChromosomeIGKA::_arrayT_distSumINSTiCLUSTE1k</a></div><div class="ttdeci">T_METRIC * _arrayT_distSumINSTiCLUSTE1k</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00796">chromosome_igka.hpp:796</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a22cfb5cf6d949a088751aa71ad3a3d39"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a22cfb5cf6d949a088751aa71ad3a3d39">gaencode::ChromosomeIGKA::_arrayT_distMaxINSTiCLUSTEk</a></div><div class="ttdeci">T_METRIC * _arrayT_distMaxINSTiCLUSTEk</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00797">chromosome_igka.hpp:797</a></div></div>
<div class="ttc" id="classdata_1_1_instance_html_a90d1eaeb66cc1470bbfdb95434fdb761"><div class="ttname"><a href="classdata_1_1_instance.html#a90d1eaeb66cc1470bbfdb95434fdb761">data::Instance::getNumDimensions</a></div><div class="ttdeci">static uintidx getNumDimensions()</div><div class="ttdef"><b>Definition:</b> <a href="instance_8hpp_source.html#l00145">instance.hpp:145</a></div></div>
<div class="ttc" id="namespacegaencode_html"><div class="ttname"><a href="namespacegaencode.html">gaencode</a></div><div class="ttdoc">Encode chromosome.</div></div>
<div class="ttc" id="classmat_1_1_matrix_base_html_a70200414022ce1479b9ddc16102b12ae"><div class="ttname"><a href="classmat_1_1_matrix_base.html#a70200414022ce1479b9ddc16102b12ae">mat::MatrixBase::getNumColumns</a></div><div class="ttdeci">const uintidx getNumColumns() const</div><div class="ttdef"><b>Definition:</b> <a href="matrix__base_8hpp_source.html#l00081">matrix_base.hpp:81</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_aec5c6d686dfb883a042323f162a685bc"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#aec5c6d686dfb883a042323f162a685bc">gaencode::ChromosomeIGKA::incrementalUpdate</a></div><div class="ttdeci">void incrementalUpdate(std::vector&lt; data::Instance&lt; T_FEATURE &gt; * &gt; &amp;aivectorptinst_instances, dist::Dist&lt; T_METRIC, T_FEATURE &gt; &amp;aifunc2p_dista)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00431">chromosome_igka.hpp:431</a></div></div>
<div class="ttc" id="classgaencode_1_1_chrom_fixed_length_html_ad0d128acd8d117278b0779b7a9714a18"><div class="ttname"><a href="classgaencode_1_1_chrom_fixed_length.html#ad0d128acd8d117278b0779b7a9714a18">gaencode::ChromFixedLength::operator=</a></div><div class="ttdeci">ChromFixedLength&lt; T_GENE, T_METRIC &gt; &amp; operator=(const ChromFixedLength&lt; T_GENE, T_METRIC &gt; &amp;aichrom_b)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__fixedlength_8hpp_source.html#l00124">chromosome_fixedlength.hpp:124</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a60f2d83ec55bda124307cb659664d02c"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a60f2d83ec55bda124307cb659664d02c">gaencode::ChromosomeIGKA::getDistSumINSTiCLUSTE1k</a></div><div class="ttdeci">T_METRIC getDistSumINSTiCLUSTE1k(uintidx aiuintidx_idxInstance)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00331">chromosome_igka.hpp:331</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_ada077e6f0562cf9c6c3062cc372bed8b"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#ada077e6f0562cf9c6c3062cc372bed8b">gaencode::ChromosomeIGKA::getIdxMinINSTiCLUSTEk</a></div><div class="ttdeci">T_CLUSTERIDX getIdxMinINSTiCLUSTEk(uintidx aiuintidx_idxInstance)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00343">chromosome_igka.hpp:343</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_acadf3ec87d9ae292a1f605c779fe772f"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#acadf3ec87d9ae292a1f605c779fe772f">gaencode::ChromosomeIGKA::getCentroids</a></div><div class="ttdeci">mat::MatrixRow&lt; T_FEATURE &gt; &amp; getCentroids()</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00311">chromosome_igka.hpp:311</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_ac3d94523feb724763c12b80ca448426d"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#ac3d94523feb724763c12b80ca448426d">gaencode::ChromosomeIGKA::_arraycidx_idxMinINSTiCLUSTEk</a></div><div class="ttdeci">T_CLUSTERIDX * _arraycidx_idxMinINSTiCLUSTEk</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00799">chromosome_igka.hpp:799</a></div></div>
<div class="ttc" id="namespaceinterfacesse_html_aa4b94bf2bf8cb7c437fa3feba8b70ff8"><div class="ttname"><a href="namespaceinterfacesse.html#aa4b94bf2bf8cb7c437fa3feba8b70ff8">interfacesse::copya</a></div><div class="ttdeci">void copya(T *aoarrayt_x, const T ait_alpha, const uintidx aiui_lengthArray)</div><div class="ttdoc">Initializes the array with a constant .</div><div class="ttdef"><b>Definition:</b> <a href="interface__level1_8hpp_source.html#l00046">interface_level1.hpp:46</a></div></div>
<div class="ttc" id="linear__algebra__level1_8hpp_html"><div class="ttname"><a href="linear__algebra__level1_8hpp.html">linear_algebra_level1.hpp</a></div><div class="ttdoc">linear algebra level1</div></div>
<div class="ttc" id="classmat_1_1_matrix_row_html_a5391a205367fbaac82a26ddc377a80af"><div class="ttname"><a href="classmat_1_1_matrix_row.html#a5391a205367fbaac82a26ddc377a80af">mat::MatrixRow::getRow</a></div><div class="ttdeci">const T_FEATURE * getRow(const uintidx i) const</div><div class="ttdef"><b>Definition:</b> <a href="matrix_8hpp_source.html#l00181">matrix.hpp:181</a></div></div>
<div class="ttc" id="classgaencode_1_1_chrom_fixed_length_html"><div class="ttname"><a href="classgaencode_1_1_chrom_fixed_length.html">gaencode::ChromFixedLength</a></div><div class="ttdoc">Chromosome with fixed length string.</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__fixedlength_8hpp_source.html#l00044">chromosome_fixedlength.hpp:44</a></div></div>
<div class="ttc" id="classgaencode_1_1_chrom_fixed_length_html_a2d0b4e4d46c2f224ce34cf795407b407"><div class="ttname"><a href="classgaencode_1_1_chrom_fixed_length.html#a2d0b4e4d46c2f224ce34cf795407b407">gaencode::ChromFixedLength::print</a></div><div class="ttdeci">virtual void print(std::ostream &amp;os=std::cout, const char *aipc_label=&quot;&quot;, const char aic_delimCoef=',', const char aic_delimRow=';') const</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__fixedlength_8hpp_source.html#l00258">chromosome_fixedlength.hpp:258</a></div></div>
<div class="ttc" id="classmat_1_1_matrix_row_html_a156313f6aa515994b76321ff03780b16"><div class="ttname"><a href="classmat_1_1_matrix_row.html#a156313f6aa515994b76321ff03780b16">mat::MatrixRow::print</a></div><div class="ttdeci">virtual void print(std::ostream &amp;os=std::cout, const char *aipc_label=&quot;&quot;, const char aic_delimCoef=',', const char aic_delimRow='\n') const</div><div class="ttdef"><b>Definition:</b> <a href="matrix_8hpp_source.html#l00336">matrix.hpp:336</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a7c50d4a2beeb274778f36d583875aba5"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a7c50d4a2beeb274778f36d583875aba5">gaencode::ChromosomeIGKA::_arrayT_distMinINSTiCLUSTEk</a></div><div class="ttdeci">T_METRIC * _arrayT_distMinINSTiCLUSTEk</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00798">chromosome_igka.hpp:798</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a554a7535ec6512c105d6078eed7af749"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a554a7535ec6512c105d6078eed7af749">gaencode::ChromosomeIGKA::_b_selected</a></div><div class="ttdeci">bool _b_selected</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00809">chromosome_igka.hpp:809</a></div></div>
<div class="ttc" id="structdist_1_1_dist_html"><div class="ttname"><a href="structdist_1_1_dist.html">dist::Dist&lt; T_METRIC, T_FEATURE &gt;</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a5000edb31dc952818aab0bba957d3c53"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a5000edb31dc952818aab0bba957d3c53">gaencode::ChromosomeIGKA::_matrixrowt_centroids</a></div><div class="ttdeci">mat::MatrixRow&lt; T_FEATURE &gt; _matrixrowt_centroids</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00789">chromosome_igka.hpp:789</a></div></div>
<div class="ttc" id="classdata_1_1_instance_html_aa6ee19c383a86228b3d134e42bdb6830"><div class="ttname"><a href="classdata_1_1_instance.html#aa6ee19c383a86228b3d134e42bdb6830">data::Instance::getFeatures</a></div><div class="ttdeci">const T_FEATURE * getFeatures() const</div><div class="ttdef"><b>Definition:</b> <a href="instance_8hpp_source.html#l00191">instance.hpp:191</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_base_html_abac472511083c6b8c3cb5208242d0d66"><div class="ttname"><a href="classgaencode_1_1_chromosome_base.html#abac472511083c6b8c3cb5208242d0d66">gaencode::ChromosomeBase::setValidString</a></div><div class="ttdeci">void setValidString(bool aib_stringInvalid)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__base_8hpp_source.html#l00098">chromosome_base.hpp:98</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a4be6e80cbed64f18e49bd56e1ef5ecad"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a4be6e80cbed64f18e49bd56e1ef5ecad">gaencode::ChromosomeIGKA::getNumClusterNotNull</a></div><div class="ttdeci">T_CLUSTERIDX getNumClusterNotNull()</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00348">chromosome_igka.hpp:348</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_acdc4ef713a9dc2b5be1be2b7a036864a"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#acdc4ef713a9dc2b5be1be2b7a036864a">gaencode::ChromosomeIGKA::~ChromosomeIGKA</a></div><div class="ttdeci">virtual ~ChromosomeIGKA()</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00201">chromosome_igka.hpp:201</a></div></div>
<div class="ttc" id="instance_8hpp_html"><div class="ttname"><a href="instance_8hpp.html">instance.hpp</a></div><div class="ttdoc">Module for the handling of instances or also called objects or points.</div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_ae132b7c0e9861ca9b550a988383b0b70"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#ae132b7c0e9861ca9b550a988383b0b70">gaencode::ChromosomeIGKA::_vectorb_changeCluster</a></div><div class="ttdeci">std::vector&lt; bool &gt; _vectorb_changeCluster</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00805">chromosome_igka.hpp:805</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a8594d1e35c89a9a9925f0a7ec8be56d7"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a8594d1e35c89a9a9925f0a7ec8be56d7">gaencode::ChromosomeIGKA::_vectorT_numInstancesClusterKDelta</a></div><div class="ttdeci">std::vector&lt; T_INSTANCES_CLUSTER_K &gt; _vectorT_numInstancesClusterKDelta</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00804">chromosome_igka.hpp:804</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a7a41e675fd697f7b39e9abe546dc8a99"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a7a41e675fd697f7b39e9abe546dc8a99">gaencode::ChromosomeIGKA::_matrixrowt_sumInstancesCluster</a></div><div class="ttdeci">mat::MatrixRow&lt; T_FEATURE_SUM &gt; _matrixrowt_sumInstancesCluster</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00790">chromosome_igka.hpp:790</a></div></div>
<div class="ttc" id="classdata_1_1_instance_html"><div class="ttname"><a href="classdata_1_1_instance.html">data::Instance</a></div><div class="ttdoc">Patterns, usually vectors in a multidimensional space.</div><div class="ttdef"><b>Definition:</b> <a href="instance_8hpp_source.html#l00037">instance.hpp:37</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a7408b088c60ca9e273e342af3c243ca5"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a7408b088c60ca9e273e342af3c243ca5">gaencode::ChromosomeIGKA::_matrixrowt_distINSTiCLUSTE1k</a></div><div class="ttdeci">mat::MatrixRow&lt; T_METRIC &gt; _matrixrowt_distINSTiCLUSTE1k</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00795">chromosome_igka.hpp:795</a></div></div>
<div class="ttc" id="namespaceinterfacesse_html_a25f6950d589b92fd5bcf2007fb3fae19"><div class="ttname"><a href="namespaceinterfacesse.html#a25f6950d589b92fd5bcf2007fb3fae19">interfacesse::sum</a></div><div class="ttdeci">T sum(const T *aoarrayt_y, const uintidx aiui_lengthArray)</div><div class="ttdef"><b>Definition:</b> <a href="interface__level1_8hpp_source.html#l00135">interface_level1.hpp:135</a></div></div>
<div class="ttc" id="namespaceclusteringop_html_ac52fbdbee047ca93bef1426d6493f31f"><div class="ttname"><a href="namespaceclusteringop.html#ac52fbdbee047ca93bef1426d6493f31f">clusteringop::getCentroids</a></div><div class="ttdeci">T_CLUSTERIDX getCentroids(mat::MatrixRow&lt; T_FEATURE &gt; &amp;aomatrixt_centroids, mat::MatrixRow&lt; T_FEATURE_SUM &gt; &amp;aomatrixt_sumInstancesCluster, std::vector&lt; T_INSTANCES_CLUSTER_K &gt; &amp;aovectort_numInstancesInClusterK, partition::Partition&lt; T_CLUSTERIDX &gt; &amp;aipartition_clusters, INPUT_ITERATOR aiiterator_instfirst, const INPUT_ITERATOR aiiterator_instlast)</div><div class="ttdef"><b>Definition:</b> <a href="clustering__operator__centroids_8hpp_source.html#l00608">clustering_operator_centroids.hpp:608</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a307864308b94df964f335f4a147b63be"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a307864308b94df964f335f4a147b63be">gaencode::ChromosomeIGKA::_matrixrowt_sumInstancesClusterDelta</a></div><div class="ttdeci">mat::MatrixRow&lt; T_FEATURE_SUM &gt; _matrixrowt_sumInstancesClusterDelta</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00802">chromosome_igka.hpp:802</a></div></div>
<div class="ttc" id="chromosome__fixedlength_8hpp_html"><div class="ttname"><a href="chromosome__fixedlength_8hpp.html">chromosome_fixedlength.hpp</a></div><div class="ttdoc">chromosome fixed length</div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_i_g_k_a_html_a18814e038f39b810fbd122c7f3e78db6"><div class="ttname"><a href="classgaencode_1_1_chromosome_i_g_k_a.html#a18814e038f39b810fbd122c7f3e78db6">gaencode::ChromosomeIGKA::_arraycidx_idxMaxINSTiCLUSTEk</a></div><div class="ttdeci">T_CLUSTERIDX * _arraycidx_idxMaxINSTiCLUSTEk</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__igka_8hpp_source.html#l00800">chromosome_igka.hpp:800</a></div></div>
<div class="ttc" id="namespaceinterfacesse_html_a9dd5fb43ad8a83ee5cb2f5ba1bb2085b"><div class="ttname"><a href="namespaceinterfacesse.html#a9dd5fb43ad8a83ee5cb2f5ba1bb2085b">interfacesse::axpy</a></div><div class="ttdeci">void axpy(T_INT1 *aoarrayt_y, const T_INT2 ait_alpha, const T_INT3 *aiarrayt_x, const uintidx aiui_lengthArray)</div><div class="ttdef"><b>Definition:</b> <a href="interface__level1_8hpp_source.html#l00156">interface_level1.hpp:156</a></div></div>
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